This adds a new `splines` module which implements a high-level interface
for creating and evaluating splines and rewrite almost all modules to
use it. Also, notably:
1. both `simplespline` and DIERCKX splines can now used with a uniform
interface
2. most complexity due to handling working space arrays is gone
3. memory management has been significantly simplified too
This converts the last remaining warnings to use the logging system.
Also drops `catand` and replace it with the intrinsic `atan`, which
supports complex as well as real numbers.
Note: before 3eab989d the `catand` function was actually incorrent!
The definition of arctan(z) can be obtained starting from the identity
d/dz arctan(z) = 1/(1 + z²) = ½ [1/(1 + iz) + 1/(1 - iz)],
integrating and using the definition log(z) = ∫₁^z dz/z,
arctan(z) = -i/2 [log(1 + iz) - log(1 - iz)].
If log is the principal branch, log(z) = log|z| + i arg(z), then
arctan(z) = -i/2 log(w) = 1/2 arg(w) -i/2 log|w|
where w = (1 + iz)/(1 - iz). Finally, the real part is
Re arctan(z) = 1/2 atan2(2Re(z), 1 - |z|²).
The term -|z|² is missing from the `catand` definition of GRAY,
but is present in the original Fortran 77 code from [SLATEC]:
it has probably been lost in the translation.
[SLATEC]: https://people.math.sc.edu/Burkardt/f_src/slatec/slatec.f90
- merge branch with a method to control the speed of iteration and
improve the convergence of `warmdisp` (thanks Thomas)
- unify `diel_tens_fr` and `diel_tens_wr` into a single subroutine,
`dielectric_tensor`
- stay as close as possible to the notation of Daniela Farina's paper
- make `sox` an integer
- mark more subroutines as pure
- add more comments
Some of the outputs of disp_deriv and plas_deriv are only needed
when updating the local plasma quantities (ywppla_upd) and not when
integrating the raytracing equations (rkstep).
This change save some unnecessary computations and variable definitions.
Also add some comments to disp_deriv
- Add missing array allocations
- Add parameter for varying number of columns in input files
- Change output unit numbers (dirty fix. Original units created an empty
named file, but wrote in default named fort.* files)
- Documentation is not built anymore with the default `all` rule to
improve portability. It must be built explicitly with `make docs`.
- Font types are not specified to allow building on systems with a
restricted set of fonts.
- Syntax fixes in the documentation Markdown.
1. Fix the mismatch between the psnbnd in coreprofiles and gray_core.
This happens whenever gray overrides the externally provided one
(i.e. the density tail would become negative before psnbnd and is so
rescaled to end exactly on the zero).
2. Make psnbnd no longer required by always computing it as in 1.
It hasn't been removed, because gray_params.data is sacrosant,
but it no longer has any effect.
3. Cleanup: mark public functions, restructure the global variables into
three categories; add comments explaining the analytical profiles
format, formulae and how the polynomial tail is computed.
This adds a new configuration file based on the INI format.
The new format will allow adding GRAY parameters without breaking
compatibility with existing configurations, unlike as of the old
gray_params.data.
The \+ syntax is not POSIX and supported only by GNU sed.
This changes both the grep and sed commands to use extended regex.
Note: sed -E option is not POSIX either, but widely supported.
